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Kiryluk Lab
Last update 1-20-22
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1. Genome-wide Polygenic Score 

This file contains a list of variants and weights comprising a genome-wide polygenic component of the risk score for chronic kidney disease reported in the manuscript "Genome-wide polygenic score with APOL1 risk genotypes predicts chronic kidney disease across major continental ancestries”. The data are presented as follows:

variant=Variant ID, as chromosome:position_hg19:allele1:allele2

effect_allele=Allele to which effect weight is relevant to

effect_weight=Weight of the effect estimate for effect_allele

chr=Chromosome

position_hg19=Position based on hg19

A1=Allele1

A2=Allele2


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2. APOL1.risk.v1.sh

This is a bash script to infer the APOL1 risk genotype from the genotype data based on plink input file in the bed/bim/fam format.

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